3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGG*UU
Length
5 nucleotides
Bulged bases
8T5H|1|v|G|926
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T5H_156 not in the Motif Atlas
Homologous match to IL_4LFB_036
Geometric discrepancy: 0.4578
The information below is about IL_4LFB_036
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.13
Basepair signature
cWW-L-cWW
Number of instances in this motif group
49

Unit IDs

8T5H|1|v|G|925
8T5H|1|v|G|926
8T5H|1|v|G|927
*
8T5H|1|v|U|1390
8T5H|1|v|U|1391

Current chains

Chain v
16S

Nearby chains

Chain x
lmRNA

Coloring options:


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