3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGU*AUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T5H_158 not in the Motif Atlas
Geometric match to IL_4TS2_003
Geometric discrepancy: 0.1929
The information below is about IL_4TS2_003
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_52767.5
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

8T5H|1|v|G|941
8T5H|1|v|G|942
8T5H|1|v|U|943
*
8T5H|1|v|A|1340
8T5H|1|v|U|1341
8T5H|1|v|C|1342

Current chains

Chain v
16S

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain f
30S ribosomal protein S7
Chain h
30S ribosomal protein S9

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1945 s
Application loaded.