IL_8T5H_159

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_159 not in the Motif Atlas

Geometric match to IL_4V88_445

Geometric discrepancy: 0.1502

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8T5H|1|v|G|953
8T5H|1|v|G|954
*
8T5H|1|v|C|1226
8T5H|1|v|A|1227
8T5H|1|v|C|1228

Current chains

Chain v

16S

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain l

30S ribosomal protein S13

Chain r

30S ribosomal protein S19