3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAAG*UGUGCCUUCGGGAAC
Length
19 nucleotides
Bulged bases
8T5H|1|v|U|1030, 8T5H|1|v|C|1031, 8T5H|1|v|G|1032
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8T5H|1|v|G|1003
8T5H|1|v|A|1004
8T5H|1|v|A|1005
8T5H|1|v|G|1006
*
8T5H|1|v|U|1023
8T5H|1|v|G|1024
8T5H|1|v|U|1025
8T5H|1|v|G|1026
8T5H|1|v|C|1027
8T5H|1|v|C|1028
8T5H|1|v|U|1029
8T5H|1|v|U|1030
8T5H|1|v|C|1031
8T5H|1|v|G|1032
8T5H|1|v|G|1033
8T5H|1|v|G|1034
8T5H|1|v|A|1035
8T5H|1|v|A|1036
8T5H|1|v|C|1037

Current chains

Chain v
16S

Nearby chains

No other chains within 10Å

Coloring options:

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