IL_8T5H_173

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

8T5H|1|v|C|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T5H|1|v|C|1259
8T5H|1|v|G|1260
8T5H|1|v|A|1261
8T5H|1|v|C|1262
8T5H|1|v|C|1263
*
8T5H|1|v|G|1272
8T5H|1|v|C|1273
8T5H|1|v|A|1274
8T5H|1|v|A|1275
8T5H|1|v|G|1276

Current chains

Chain v

16S

Nearby chains

Chain m

30S ribosomal protein S14

Chain r

30S ribosomal protein S19

Chain u

Transcription termination/antitermination protein NusG