IL_8T5H_177

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_177 not in the Motif Atlas

Geometric match to IL_5MWI_007

Geometric discrepancy: 0.1234

The information below is about IL_5MWI_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8T5H|1|v|G|1405
8T5H|1|v|U|1406
8T5H|1|v|C|1407
*
8T5H|1|v|G|1494
8T5H|1|v|U|1495
8T5H|1|v|C|1496

Current chains

Chain v

16S

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain x

lmRNA