IL_8T5H_179

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_179 not in the Motif Atlas

Homologous match to IL_5J7L_061

Geometric discrepancy: 0.0986

The information below is about IL_5J7L_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8T5H|1|v|C|1412
8T5H|1|v|A|1413
8T5H|1|v|U|1414
*
8T5H|1|v|G|1486
8T5H|1|v|G|1487
8T5H|1|v|G|1488

Current chains

Chain v

16S

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain k

30S ribosomal protein S12