IL_8T5H_186

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5H_186 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0766

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8T5H|1|B|G|1666
8T5H|1|B|G|1667
8T5H|1|B|A|1668
8T5H|1|B|A|1669
8T5H|1|B|C|1670
8T5H|1|B|U|1671
8T5H|1|B|A|1672
8T5H|1|B|G|1673
8T5H|1|B|G|1674
*
8T5H|1|B|C|1990
8T5H|1|B|U|1991
8T5H|1|B|G|1992
8T5H|1|B|U|1993
8T5H|1|B|C|1994

Current chains

Chain B

23S

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14