3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GCCUUGAUGUGUAGGAUAGGUG*CACCCUUUAAUGU
Length
35 nucleotides
Bulged bases
8T5H|1|B|G|2110, 8T5H|1|B|U|2111, 8T5H|1|B|U|2113, 8T5H|1|B|G|2116, 8T5H|1|B|A|2117, 8T5H|1|B|U|2118, 8T5H|1|B|G|2120, 8T5H|1|B|A|2183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8T5H|1|B|G|2102
8T5H|1|B|C|2103
8T5H|1|B|C|2104
8T5H|1|B|U|2105
8T5H|1|B|U|2106
8T5H|1|B|G|2107
8T5H|1|B|A|2108
8T5H|1|B|U|2109
8T5H|1|B|G|2110
8T5H|1|B|U|2111
8T5H|1|B|G|2112
8T5H|1|B|U|2113
8T5H|1|B|A|2114
8T5H|1|B|G|2115
8T5H|1|B|G|2116
8T5H|1|B|A|2117
8T5H|1|B|U|2118
8T5H|1|B|A|2119
8T5H|1|B|G|2120
8T5H|1|B|G|2121
8T5H|1|B|U|2122
8T5H|1|B|G|2123
*
8T5H|1|B|C|2175
8T5H|1|B|A|2176
8T5H|1|B|C|2177
8T5H|1|B|C|2178
8T5H|1|B|C|2179
8T5H|1|B|U|2180
8T5H|1|B|U|2181
8T5H|1|B|U|2182
8T5H|1|B|A|2183
8T5H|1|B|A|2184
8T5H|1|B|U|2185
8T5H|1|B|G|2186
8T5H|1|B|U|2187

Current chains

Chain B
23S

Nearby chains

No other chains within 10Å

Coloring options:

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