IL_8T5H_189
3D structure
- PDB id
- 8T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGGAGGCUUUGAAGUGUGG*CUGCAUGGAGCCGACCUUGAAAUACC
- Length
- 45 nucleotides
- Bulged bases
- 8T5H|1|B|A|2126, 8T5H|1|B|G|2127, 8T5H|1|B|U|2130, 8T5H|1|B|U|2131, 8T5H|1|B|G|2136, 8T5H|1|B|A|2169, 8T5H|1|B|A|2170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T5H|1|B|G|2123
8T5H|1|B|G|2124
8T5H|1|B|G|2125
8T5H|1|B|A|2126
8T5H|1|B|G|2127
8T5H|1|B|G|2128
8T5H|1|B|C|2129
8T5H|1|B|U|2130
8T5H|1|B|U|2131
8T5H|1|B|U|2132
8T5H|1|B|G|2133
8T5H|1|B|A|2134
8T5H|1|B|A|2135
8T5H|1|B|G|2136
8T5H|1|B|U|2137
8T5H|1|B|G|2138
8T5H|1|B|U|2139
8T5H|1|B|G|2140
8T5H|1|B|G|2141
*
8T5H|1|B|C|2150
8T5H|1|B|U|2151
8T5H|1|B|G|2152
8T5H|1|B|C|2153
8T5H|1|B|A|2154
8T5H|1|B|U|2155
8T5H|1|B|G|2156
8T5H|1|B|G|2157
8T5H|1|B|A|2158
8T5H|1|B|G|2159
8T5H|1|B|C|2160
8T5H|1|B|C|2161
8T5H|1|B|G|2162
8T5H|1|B|A|2163
8T5H|1|B|C|2164
8T5H|1|B|C|2165
8T5H|1|B|U|2166
8T5H|1|B|U|2167
8T5H|1|B|G|2168
8T5H|1|B|A|2169
8T5H|1|B|A|2170
8T5H|1|B|A|2171
8T5H|1|B|U|2172
8T5H|1|B|A|2173
8T5H|1|B|C|2174
8T5H|1|B|C|2175
Current chains
- Chain B
- 23S
Nearby chains
No other chains within 10ÅColoring options: