3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGGAGGCUUUGAAGUGUGG*CUGCAUGGAGCCGACCUUGAAAUACC
Length
45 nucleotides
Bulged bases
8T5H|1|B|A|2126, 8T5H|1|B|G|2127, 8T5H|1|B|U|2130, 8T5H|1|B|U|2131, 8T5H|1|B|G|2136, 8T5H|1|B|A|2169, 8T5H|1|B|A|2170
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8T5H|1|B|G|2123
8T5H|1|B|G|2124
8T5H|1|B|G|2125
8T5H|1|B|A|2126
8T5H|1|B|G|2127
8T5H|1|B|G|2128
8T5H|1|B|C|2129
8T5H|1|B|U|2130
8T5H|1|B|U|2131
8T5H|1|B|U|2132
8T5H|1|B|G|2133
8T5H|1|B|A|2134
8T5H|1|B|A|2135
8T5H|1|B|G|2136
8T5H|1|B|U|2137
8T5H|1|B|G|2138
8T5H|1|B|U|2139
8T5H|1|B|G|2140
8T5H|1|B|G|2141
*
8T5H|1|B|C|2150
8T5H|1|B|U|2151
8T5H|1|B|G|2152
8T5H|1|B|C|2153
8T5H|1|B|A|2154
8T5H|1|B|U|2155
8T5H|1|B|G|2156
8T5H|1|B|G|2157
8T5H|1|B|A|2158
8T5H|1|B|G|2159
8T5H|1|B|C|2160
8T5H|1|B|C|2161
8T5H|1|B|G|2162
8T5H|1|B|A|2163
8T5H|1|B|C|2164
8T5H|1|B|C|2165
8T5H|1|B|U|2166
8T5H|1|B|U|2167
8T5H|1|B|G|2168
8T5H|1|B|A|2169
8T5H|1|B|A|2170
8T5H|1|B|A|2171
8T5H|1|B|U|2172
8T5H|1|B|A|2173
8T5H|1|B|C|2174
8T5H|1|B|C|2175

Current chains

Chain B
23S

Nearby chains

No other chains within 10Å

Coloring options:

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