IL_8T8B_013

3D structure

PDB id

8T8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

8T8B|1|1A|U|504, 8T8B|1|1A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T8B_013 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0441

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8T8B|1|1A|G|481
8T8B|1|1A|A|482
8T8B|1|1A|A|483
8T8B|1|1A|C|484
*
8T8B|1|1A|G|496
8T8B|1|1A|A|497
8T8B|1|1A|G|498
8T8B|1|1A|U|499
8T8B|1|1A|G|500
8T8B|1|1A|A|501
8T8B|1|1A|A|502
8T8B|1|1A|A|503
8T8B|1|1A|U|504
8T8B|1|1A|A|505
8T8B|1|1A|G|506
8T8B|1|1A|A|507
8T8B|1|1A|G|508
8T8B|1|1A|C|509

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1W

50S ribosomal protein L22

Chain 1Y

50S ribosomal protein L24