IL_8T8C_085

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T8C_085 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.3396

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

8T8C|1|1A|G|2110
8T8C|1|1A|C|2111
8T8C|1|1A|G|2112
8T8C|1|1A|U|2113
8T8C|1|1A|A|2114
8T8C|1|1A|G|2115
8T8C|1|1A|G|2116
8T8C|1|1A|A|2117
8T8C|1|1A|U|2118
8T8C|1|1A|A|2119
8T8C|1|1A|G|2120
*
8T8C|1|1A|C|2178
8T8C|1|1A|C|2179

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains