3D structure

PDB id
8T8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GACAAC*GCUAAUC
Length
13 nucleotides
Bulged bases
8T8C|1|1a|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T8C_124 not in the Motif Atlas
Homologous match to IL_4LFB_009
Geometric discrepancy: 0.1136
The information below is about IL_4LFB_009
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_12745.1
Basepair signature
cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
1

Unit IDs

8T8C|1|1a|G|148
8T8C|1|1a|A|149
8T8C|1|1a|C|150
8T8C|1|1a|A|151
8T8C|1|1a|A|152
8T8C|1|1a|C|153
*
8T8C|1|1a|G|168
8T8C|1|1a|C|169
8T8C|1|1a|U|170
8T8C|1|1a|A|171
8T8C|1|1a|A|172
8T8C|1|1a|U|173
8T8C|1|1a|C|174

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1t
30S ribosomal protein S20

Coloring options:


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