3D structure

PDB id
8T8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GAGAG*UGGU
Length
9 nucleotides
Bulged bases
8T8C|1|1a|A|665
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T8C_144 not in the Motif Atlas
Homologous match to IL_4LFB_029
Geometric discrepancy: 0.0981
The information below is about IL_4LFB_029
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

8T8C|1|1a|G|662
8T8C|1|1a|A|663
8T8C|1|1a|G|664
8T8C|1|1a|A|665
8T8C|1|1a|G|666
*
8T8C|1|1a|U|740
8T8C|1|1a|G|741
8T8C|1|1a|G|742
8T8C|1|1a|U|743

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1f
30S ribosomal protein S6
Chain 1o
30S ribosomal protein S15
Chain 1r
30S ribosomal protein S18

Coloring options:


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