IL_8T8C_214

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGUAAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

8T8C|1|2A|U|1026, 8T8C|1|2A|A|1127, 8T8C|1|2A|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T8C_214 not in the Motif Atlas

Geometric match to IL_7RQB_040

Geometric discrepancy: 0.0548

The information below is about IL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

8T8C|1|2A|G|1024
8T8C|1|2A|G|1025
8T8C|1|2A|U|1026
8T8C|1|2A|A|1027
8T8C|1|2A|A|1028
8T8C|1|2A|A|1029
8T8C|1|2A|G|1030
*
8T8C|1|2A|C|1124
8T8C|1|2A|G|1125
8T8C|1|2A|A|1126
8T8C|1|2A|A|1127
8T8C|1|2A|A|1128
8T8C|1|2A|A|1129
8T8C|1|2A|U|1130
8T8C|1|2A|G|1131
8T8C|1|2A|A|1132
8T8C|1|2A|U|1133
8T8C|1|2A|C|1135
8T8C|1|2A|G|1136
8T8C|1|2A|G|1137
8T8C|1|2A|G|1138
8T8C|1|2A|G|1139
8T8C|1|2A|C|1140

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2Q

50S ribosomal protein L16