3D structure

PDB id
8T8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
UACAAAG*CAAAAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T8C_340 not in the Motif Atlas
Homologous match to IL_4LFB_051
Geometric discrepancy: 0.132
The information below is about IL_4LFB_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

8T8C|1|2a|U|1247
8T8C|1|2a|A|1248
8T8C|1|2a|C|1249
8T8C|1|2a|A|1250
8T8C|1|2a|A|1251
8T8C|1|2a|A|1252
8T8C|1|2a|G|1253
*
8T8C|1|2a|C|1284
8T8C|1|2a|A|1285
8T8C|1|2a|A|1286
8T8C|1|2a|A|1287
8T8C|1|2a|A|1288
8T8C|1|2a|A|1289
8T8C|1|2a|G|1290

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2g
30S ribosomal protein S7
Chain 2i
30S ribosomal protein S9
Chain 2j
30S ribosomal protein S10
Chain 2n
30S ribosomal protein S14 type Z
Chain 2u
30S ribosomal protein Thx

Coloring options:


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