IL_8T8C_381

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

8T8C|1|1A|U|2132, 8T8C|1|1A|A|2158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T8C_381 not in the Motif Atlas

Homologous match to IL_9DFE_087

Geometric discrepancy: 0.1784

The information below is about IL_9DFE_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T8C|1|1A|C|2129
8T8C|1|1A|U|2130
8T8C|1|1A|G|2131
8T8C|1|1A|U|2132
8T8C|1|1A|G|2133
8T8C|1|1A|A|2134
8T8C|1|1A|A|2135
8T8C|1|1A|C|2136
*
8T8C|1|1A|G|2155
8T8C|1|1A|G|2156
8T8C|1|1A|G|2157
8T8C|1|1A|A|2158
8T8C|1|1A|G|2159

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains