3D structure

PDB id
8T8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CUGUGAAC*GGGAG
Length
13 nucleotides
Bulged bases
8T8C|1|1A|U|2132, 8T8C|1|1A|A|2158
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T8C_381 not in the Motif Atlas
Homologous match to IL_9DFE_087
Geometric discrepancy: 0.1784
The information below is about IL_9DFE_087
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8T8C|1|1A|C|2129
8T8C|1|1A|U|2130
8T8C|1|1A|G|2131
8T8C|1|1A|U|2132
8T8C|1|1A|G|2133
8T8C|1|1A|A|2134
8T8C|1|1A|A|2135
8T8C|1|1A|C|2136
*
8T8C|1|1A|G|2155
8T8C|1|1A|G|2156
8T8C|1|1A|G|2157
8T8C|1|1A|A|2158
8T8C|1|1A|G|2159

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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