IL_8TZZ_008

3D structure

PDB id

8TZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SpG Cas9 with NGC PAM DNA target

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

UAGAG*CAAGUUA

Length

12 nucleotides

Bulged bases

8TZZ|1|B|A|28, 8TZZ|1|B|U|44

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8TZZ|1|B|U|25
8TZZ|1|B|A|26
8TZZ|1|B|G|27
8TZZ|1|B|A|28
8TZZ|1|B|G|29
*
8TZZ|1|B|C|40
8TZZ|1|B|A|41
8TZZ|1|B|A|42
8TZZ|1|B|G|43
8TZZ|1|B|U|44
8TZZ|1|B|U|45
8TZZ|1|B|A|46

Current chains

Chain B

RNA (98-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1