IL_8UB7_002

3D structure

PDB id

8UB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Active state (N-occupied)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UB7_002 not in the Motif Atlas

Geometric match to IL_4NGF_002

Geometric discrepancy: 0.1223

The information below is about IL_4NGF_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

8UB7|1|H|G|119
8UB7|1|H|C|120
8UB7|1|H|C|121
*
8UB7|1|I|G|53
8UB7|1|I|U|54
8UB7|1|I|C|55

Current chains

Chain H

Diversity-generating retroelement (DGR) RNA TR

Chain I

Diversity-generating retroelement (DGR) RNA Sp

Nearby chains

Chain A

Reverse transcriptase