IL_8UB8_001
3D structure
- PDB id
- 8UB8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active State 1a
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- AGGC*GUUCU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UB8_001 not in the Motif Atlas
- Geometric match to IL_1HYS_004
- Geometric discrepancy: 0.3535
- The information below is about IL_1HYS_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
8UB8|1|G|A|374
8UB8|1|G|G|375
8UB8|1|G|G|376
8UB8|1|G|C|377
*
8UB8|1|I|G|61
8UB8|1|I|U|62
8UB8|1|I|U|63
8UB8|1|I|C|64
8UB8|1|I|U|65
Current chains
- Chain G
- Diversity-generating retroelement (DGR) RNA avd
- Chain I
- Diversity-generating retroelement (DGR) RNA Sp
Nearby chains
- Chain A
- Reverse transcriptase
Coloring options: