IL_8UB8_003

3D structure

PDB id

8UB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active State 1a

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUC*GG

Length

5 nucleotides

Bulged bases

8UB8|1|I|U|7

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UB8_003 not in the Motif Atlas

Geometric match to IL_3WBM_001

Geometric discrepancy: 0.3784

The information below is about IL_3WBM_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

8UB8|1|I|C|6
8UB8|1|I|U|7
8UB8|1|I|C|8
*
8UB8|1|I|G|30
8UB8|1|I|G|31

Current chains

Chain I

Diversity-generating retroelement (DGR) RNA Sp

Nearby chains

Chain C

Avd

Chain D

Avd

Chain E

Avd

Chain F

Avd