IL_8UBB_004

3D structure

PDB id

8UBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Active State (N-empty) 1b

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UBB_004 not in the Motif Atlas

Geometric match to IL_1U6B_007

Geometric discrepancy: 0.2093

The information below is about IL_1U6B_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_41261.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8UBB|1|I|A|14
8UBB|1|I|C|15
8UBB|1|I|G|16
*
8UBB|1|I|C|23
8UBB|1|I|U|24

Current chains

Chain I

Diversity-generating retroelement (DGR) RNA Sp

Nearby chains

Chain E

Avd

Chain F

Avd