IL_8UBE_007

3D structure

PDB id

8UBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Resting State 1a

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGAUUAC*GGAAAG

Length

13 nucleotides

Bulged bases

8UBE|1|I|U|110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UBE_007 not in the Motif Atlas

Geometric match to IL_5J7L_251

Geometric discrepancy: 0.2729

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8UBE|1|I|C|107
8UBE|1|I|G|108
8UBE|1|I|A|109
8UBE|1|I|U|110
8UBE|1|I|U|111
8UBE|1|I|A|112
8UBE|1|I|C|113
*
8UBE|1|I|G|121
8UBE|1|I|G|122
8UBE|1|I|A|123
8UBE|1|I|A|124
8UBE|1|I|A|125
8UBE|1|I|G|126

Current chains

Chain I

Diversity-generating retroelement (DGR) RNA Sp

Nearby chains

Chain A

Reverse transcriptase