IL_8UBF_004

3D structure

PDB id

8UBF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Diversity-generating retroelement (DGR) ribonucleoprotein - Resting state 1c

Experimental method

ELECTRON MICROSCOPY

Resolution

3.61 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8UBF|1|I|U|94

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UBF_004 not in the Motif Atlas

Geometric match to IL_4WF9_030

Geometric discrepancy: 0.3782

The information below is about IL_4WF9_030

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

8UBF|1|I|G|93
8UBF|1|I|U|94
8UBF|1|I|U|95
*
8UBF|1|I|A|136
8UBF|1|I|C|137

Current chains

Chain I

Diversity-generating retroelement (DGR) RNA Sp

Nearby chains

Chain A

Reverse transcriptase