IL_8UD6_017
3D structure
- PDB id
- 8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8UD6|1|1A|G|801, 8UD6|1|1A|G|805
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UD6_017 not in the Motif Atlas
- Homologous match to IL_7RQB_018
- Geometric discrepancy: 0.0349
- The information below is about IL_7RQB_018
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.6
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8UD6|1|1A|G|674
8UD6|1|1A|A|675
8UD6|1|1A|A|676
8UD6|1|1A|A|677
8UD6|1|1A|C|678
*
8UD6|1|1A|G|799
8UD6|1|1A|A|800
8UD6|1|1A|G|801
8UD6|1|1A|A|802
8UD6|1|1A|U|803
8UD6|1|1A|A|804
8UD6|1|1A|G|805
8UD6|1|1A|C|806
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
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