IL_8UD6_119

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

8UD6|1|1a|G|129|||A, 8UD6|1|1a|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD6_119 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1041

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8UD6|1|1a|U|129
8UD6|1|1a|G|129|||A
8UD6|1|1a|A|130
8UD6|1|1a|C|131
*
8UD6|1|1a|G|231
8UD6|1|1a|G|232

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16

Chain 1q

30S ribosomal protein S17

Chain 1t

30S ribosomal protein S20