3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
8UD6|1|1a|A|532, 8UD6|1|1a|U|534, 8UD6|1|1a|A|535
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UD6_133 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.0875
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

8UD6|1|1a|G|515
8UD6|1|1a|PSU|516
8UD6|1|1a|G|517
8UD6|1|1a|C|518
8UD6|1|1a|C|519
8UD6|1|1a|A|520
8UD6|1|1a|G|521
*
8UD6|1|1a|C|528
8UD6|1|1a|G|529
8UD6|1|1a|G|530
8UD6|1|1a|U|531
8UD6|1|1a|A|532
8UD6|1|1a|A|533
8UD6|1|1a|U|534
8UD6|1|1a|A|535
8UD6|1|1a|C|536

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1c
30S ribosomal protein S3
Chain 1d
30S ribosomal protein S4
Chain 1l
30S ribosomal protein S12
Chain 1v
MF-mRNA
Chain 1w
Transfer RNA; tRNA

Coloring options:


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