IL_8UD6_141
3D structure
- PDB id
- 8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GAGAG*UGGU
- Length
- 9 nucleotides
- Bulged bases
- 8UD6|1|1a|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UD6_141 not in the Motif Atlas
- Homologous match to IL_4LFB_029
- Geometric discrepancy: 0.0817
- The information below is about IL_4LFB_029
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
8UD6|1|1a|G|662
8UD6|1|1a|A|663
8UD6|1|1a|G|664
8UD6|1|1a|A|665
8UD6|1|1a|G|666
*
8UD6|1|1a|U|740
8UD6|1|1a|G|741
8UD6|1|1a|G|742
8UD6|1|1a|U|743
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1f
- 30S ribosomal protein S6
- Chain 1o
- 30S ribosomal protein S15
- Chain 1r
- 30S ribosomal protein S18
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