IL_8UD6_213

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGUAAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

8UD6|1|2A|U|1026, 8UD6|1|2A|A|1127, 8UD6|1|2A|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD6_213 not in the Motif Atlas

Geometric match to IL_7RQB_040

Geometric discrepancy: 0.0517

The information below is about IL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

8UD6|1|2A|G|1024
8UD6|1|2A|G|1025
8UD6|1|2A|U|1026
8UD6|1|2A|A|1027
8UD6|1|2A|A|1028
8UD6|1|2A|A|1029
8UD6|1|2A|G|1030
*
8UD6|1|2A|C|1124
8UD6|1|2A|G|1125
8UD6|1|2A|A|1126
8UD6|1|2A|A|1127
8UD6|1|2A|A|1128
8UD6|1|2A|A|1129
8UD6|1|2A|U|1130
8UD6|1|2A|G|1131
8UD6|1|2A|A|1132
8UD6|1|2A|U|1133
8UD6|1|2A|C|1135
8UD6|1|2A|G|1136
8UD6|1|2A|G|1137
8UD6|1|2A|G|1138
8UD6|1|2A|G|1139
8UD6|1|2A|C|1140

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2Q

50S ribosomal protein L16