IL_8UD6_217
3D structure
- PDB id
- 8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8UD6|1|2A|U|1211
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UD6_217 not in the Motif Atlas
- Homologous match to IL_7RQB_047
- Geometric discrepancy: 0.0565
- The information below is about IL_7RQB_047
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 28
Unit IDs
8UD6|1|2A|C|1208
8UD6|1|2A|G|1209
8UD6|1|2A|A|1210
8UD6|1|2A|U|1211
8UD6|1|2A|G|1212
8UD6|1|2A|A|1213
8UD6|1|2A|A|1214
8UD6|1|2A|G|1215
*
8UD6|1|2A|U|1234
8UD6|1|2A|G|1235
8UD6|1|2A|G|1236
8UD6|1|2A|A|1237
8UD6|1|2A|G|1238
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2U
- 50S ribosomal protein L20
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