3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
8UD6|1|2A|A|1379
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UD6_222 not in the Motif Atlas
Homologous match to IL_7RQB_052
Geometric discrepancy: 0.0395
The information below is about IL_7RQB_052
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
20

Unit IDs

8UD6|1|2A|C|1351
8UD6|1|2A|U|1352
8UD6|1|2A|A|1353
8UD6|1|2A|A|1354
8UD6|1|2A|G|1355
*
8UD6|1|2A|C|1376
8UD6|1|2A|G|1377
8UD6|1|2A|A|1378
8UD6|1|2A|A|1379
8UD6|1|2A|G|1380

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 27
50S ribosomal protein L34
Chain 2D
50S ribosomal protein L2

Coloring options:


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