IL_8UD6_225

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

8UD6|1|2A|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD6_225 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0849

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

8UD6|1|2A|C|1417
8UD6|1|2A|G|1418
8UD6|1|2A|A|1419
8UD6|1|2A|U|1420
8UD6|1|2A|G|1421
*
8UD6|1|2A|C|1577
8UD6|1|2A|U|1578
8UD6|1|2A|A|1579
8UD6|1|2A|A|1580
8UD6|1|2A|G|1581

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains