IL_8UD6_227

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

8UD6|1|2A|A|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD6_227 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0528

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8UD6|1|2A|C|1437
8UD6|1|2A|U|1438
8UD6|1|2A|A|1439
8UD6|1|2A|G|1440
*
8UD6|1|2A|C|1551
8UD6|1|2A|G|1552
8UD6|1|2A|A|1553
8UD6|1|2A|A|1554
8UD6|1|2A|G|1555

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains