IL_8UD6_231

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

8UD6|1|2A|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD6_231 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.2756

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8UD6|1|2A|U|1481
8UD6|1|2A|G|1482
*
8UD6|1|2A|C|1506
8UD6|1|2A|A|1507
8UD6|1|2A|A|1508
8UD6|1|2A|C|1509
8UD6|1|2A|A|1509|||A
8UD6|1|2A|A|1509|||B
8UD6|1|2A|G|1510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains