IL_8UD6_256

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD6_256 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3351

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8UD6|1|2A|G|2124
8UD6|1|2A|G|2125
8UD6|1|2A|A|2126
8UD6|1|2A|G|2127
*
8UD6|1|2A|C|2161
8UD6|1|2A|G|2162
8UD6|1|2A|C|2163
8UD6|1|2A|C|2164
8UD6|1|2A|G|2165
8UD6|1|2A|G|2166
8UD6|1|2A|U|2167
8UD6|1|2A|G|2168
8UD6|1|2A|A|2169
8UD6|1|2A|A|2170
8UD6|1|2A|A|2171
8UD6|1|2A|U|2172
8UD6|1|2A|A|2173
8UD6|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA