IL_8UD6_257

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCUGUGAAC*GGGAGG

Length

15 nucleotides

Bulged bases

8UD6|1|2A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD6_257 not in the Motif Atlas

Geometric match to IL_6HCT_001

Geometric discrepancy: 0.3678

The information below is about IL_6HCT_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_64900.1

Basepair signature

cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

Number of instances in this motif group

3

Unit IDs

8UD6|1|2A|C|2128
8UD6|1|2A|C|2129
8UD6|1|2A|U|2130
8UD6|1|2A|G|2131
8UD6|1|2A|U|2132
8UD6|1|2A|G|2133
8UD6|1|2A|A|2134
8UD6|1|2A|A|2135
8UD6|1|2A|C|2136
*
8UD6|1|2A|G|2155
8UD6|1|2A|G|2156
8UD6|1|2A|G|2157
8UD6|1|2A|A|2158
8UD6|1|2A|G|2159
8UD6|1|2A|G|2160

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains