3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
UAGU*AG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UD6_298 not in the Motif Atlas
Homologous match to IL_5J7L_015
Geometric discrepancy: 0.1111
The information below is about IL_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47074.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
4

Unit IDs

8UD6|1|2a|U|249
8UD6|1|2a|A|250
8UD6|1|2a|G|251
8UD6|1|2a|U|252
*
8UD6|1|2a|A|274
8UD6|1|2a|G|275

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2q
30S ribosomal protein S17

Coloring options:


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