IL_8UD6_317

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

8UD6|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD6_317 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.0907

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_37722.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

2

Unit IDs

8UD6|1|2a|G|683
8UD6|1|2a|A|684
8UD6|1|2a|G|685
8UD6|1|2a|U|686
8UD6|1|2a|A|687
8UD6|1|2a|G|688
*
8UD6|1|2a|C|699
8UD6|1|2a|G|700
8UD6|1|2a|C|701
8UD6|1|2a|A|702
8UD6|1|2a|G|703
8UD6|1|2a|A|704
8UD6|1|2a|U|705
8UD6|1|2a|A|706
8UD6|1|2a|C|707

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11