IL_8UD6_323

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8UD6|1|2a|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD6_323 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1205

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8UD6|1|2a|G|933
8UD6|1|2a|C|934
8UD6|1|2a|A|935
*
8UD6|1|2a|U|1380
8UD6|1|2a|U|1381
8UD6|1|2a|C|1382
8UD6|1|2a|C|1383
8UD6|1|2a|C|1384

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2v

MF-mRNA

Chain 2x

Transfer RNA; tRNA

Chain 2y

Transfer RNA; tRNA