IL_8UD6_360

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD6_360 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0552

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8UD6|1|2A|G|1666
8UD6|1|2A|G|1667
8UD6|1|2A|A|1668
8UD6|1|2A|A|1669
8UD6|1|2A|C|1670
8UD6|1|2A|U|1671
8UD6|1|2A|C|1672
8UD6|1|2A|U|1673
8UD6|1|2A|G|1674
*
8UD6|1|2A|C|1990
8UD6|1|2A|U|1991
8UD6|1|2A|G|1992
8UD6|1|2A|U|1993
8UD6|1|2A|C|1994

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14