IL_8UD7_017

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8UD7|1|1A|G|801, 8UD7|1|1A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD7_017 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0366

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8UD7|1|1A|G|674
8UD7|1|1A|A|675
8UD7|1|1A|A|676
8UD7|1|1A|A|677
8UD7|1|1A|C|678
*
8UD7|1|1A|G|799
8UD7|1|1A|A|800
8UD7|1|1A|G|801
8UD7|1|1A|A|802
8UD7|1|1A|U|803
8UD7|1|1A|A|804
8UD7|1|1A|G|805
8UD7|1|1A|C|806

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15