IL_8UD7_040
3D structure
- PDB id
- 8UD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 8UD7|1|1A|U|1026, 8UD7|1|1A|A|1127, 8UD7|1|1A|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UD7_040 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0289
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8UD7|1|1A|G|1024
8UD7|1|1A|G|1025
8UD7|1|1A|U|1026
8UD7|1|1A|A|1027
8UD7|1|1A|A|1028
8UD7|1|1A|A|1029
8UD7|1|1A|G|1030
*
8UD7|1|1A|C|1124
8UD7|1|1A|G|1125
8UD7|1|1A|A|1126
8UD7|1|1A|A|1127
8UD7|1|1A|A|1128
8UD7|1|1A|A|1129
8UD7|1|1A|U|1130
8UD7|1|1A|G|1131
8UD7|1|1A|A|1132
8UD7|1|1A|U|1133
8UD7|1|1A|C|1135
8UD7|1|1A|G|1136
8UD7|1|1A|G|1137
8UD7|1|1A|G|1138
8UD7|1|1A|G|1139
8UD7|1|1A|C|1140
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
- Chain 1Q
- 50S ribosomal protein L16
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