IL_8UD7_054

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

8UD7|1|1A|C|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD7_054 not in the Motif Atlas

Homologous match to IL_7RQB_054

Geometric discrepancy: 0.1101

The information below is about IL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67474.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8UD7|1|1A|U|1415
8UD7|1|1A|G|1416
*
8UD7|1|1A|C|1582
8UD7|1|1A|A|1583
8UD7|1|1A|C|1584
8UD7|1|1A|A|1586
8UD7|1|1A|A|1587

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains