IL_8UD7_085

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD7_085 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.2461

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

8UD7|1|1A|G|2110
8UD7|1|1A|C|2111
8UD7|1|1A|G|2112
8UD7|1|1A|U|2113
8UD7|1|1A|A|2114
8UD7|1|1A|G|2115
8UD7|1|1A|G|2116
8UD7|1|1A|A|2117
8UD7|1|1A|U|2118
8UD7|1|1A|A|2119
8UD7|1|1A|G|2120
*
8UD7|1|1A|C|2178
8UD7|1|1A|C|2179

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA