IL_8UD7_186

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGGACAC*GUG

Length

10 nucleotides

Bulged bases

8UD7|1|2A|C|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD7_186 not in the Motif Atlas

Homologous match to IL_8VTW_009

Geometric discrepancy: 0.5406

The information below is about IL_8VTW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

14

Unit IDs

8UD7|1|2A|C|272|||J
8UD7|1|2A|G|274
8UD7|1|2A|G|275
8UD7|1|2A|A|276
8UD7|1|2A|C|277
8UD7|1|2A|A|278
8UD7|1|2A|C|279
*
8UD7|1|2A|G|361
8UD7|1|2A|U|362
8UD7|1|2A|G|363

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains