IL_8UD7_190

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

8UD7|1|2A|U|504, 8UD7|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD7_190 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0349

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8UD7|1|2A|G|481
8UD7|1|2A|A|482
8UD7|1|2A|A|483
8UD7|1|2A|C|484
*
8UD7|1|2A|G|496
8UD7|1|2A|A|497
8UD7|1|2A|G|498
8UD7|1|2A|U|499
8UD7|1|2A|G|500
8UD7|1|2A|A|501
8UD7|1|2A|A|502
8UD7|1|2A|A|503
8UD7|1|2A|U|504
8UD7|1|2A|A|505
8UD7|1|2A|G|506
8UD7|1|2A|A|507
8UD7|1|2A|G|508
8UD7|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24