IL_8UD7_220

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8UD7|1|2A|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD7_220 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0473

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

8UD7|1|2A|C|1208
8UD7|1|2A|G|1209
8UD7|1|2A|A|1210
8UD7|1|2A|U|1211
8UD7|1|2A|G|1212
8UD7|1|2A|A|1213
8UD7|1|2A|A|1214
8UD7|1|2A|G|1215
*
8UD7|1|2A|U|1234
8UD7|1|2A|G|1235
8UD7|1|2A|G|1236
8UD7|1|2A|A|1237
8UD7|1|2A|G|1238

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20