IL_8UD7_345

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

8UD7|1|2a|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD7_345 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0623

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8UD7|1|2a|C|1399
8UD7|1|2a|5MC|1400
8UD7|1|2a|G|1401
*
8UD7|1|2a|C|1501
8UD7|1|2a|A|1502
8UD7|1|2a|A|1503
8UD7|1|2a|G|1504

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2v

MF-mRNA

Chain 2x

Transfer RNA; tRNA