IL_8UD8_063

3D structure

PDB id

8UD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

8UD8|1|1A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD8_063 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.058

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8UD8|1|1A|G|1526
8UD8|1|1A|G|1527
8UD8|1|1A|A|1528
8UD8|1|1A|A|1528|||A
8UD8|1|1A|G|1529
*
8UD8|1|1A|U|1540
8UD8|1|1A|G|1541
8UD8|1|1A|A|1542
8UD8|1|1A|C|1543
8UD8|1|1A|A|1544
8UD8|1|1A|A|1545
8UD8|1|1A|C|1546

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains