IL_8UD8_134
3D structure
- PDB id
- 8UD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAACC*GACUGAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UD8_134 not in the Motif Atlas
- Geometric match to IL_4LFB_019
- Geometric discrepancy: 0.0791
- The information below is about IL_4LFB_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31561.1
- Basepair signature
- cWW-L-R-tWH-tWH-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8UD8|1|1a|G|450
8UD8|1|1a|A|451
8UD8|1|1a|A|452
8UD8|1|1a|A|453
8UD8|1|1a|C|454
8UD8|1|1a|C|455
*
8UD8|1|1a|G|476
8UD8|1|1a|A|477
8UD8|1|1a|C|479
8UD8|1|1a|U|480
8UD8|1|1a|G|481
8UD8|1|1a|A|482
8UD8|1|1a|C|483
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1p
- 30S ribosomal protein S16
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